Results of IndexMed GRAIL Days 2016: How to use standards to build GRAphs and mIne data for environmentaL research? IndexMeed consortium for data mining in ecology
Romain David
(1)
,
Jean-Pierre Féral
(1)
,
Anne-Sophie Archambeau
(2)
,
Fanny Arnaud
(3)
,
David Auber
(4)
,
Nicolas Bailly
(5)
,
Loup Bernard
(6)
,
Cyrille Blanpain
(7)
,
Vincent Breton
(8)
,
Denis Couvet
(9)
,
Anna Cohen-Nabeiro
(10)
,
Aurélie Delavaud
(10)
,
Alrick Dias
,
Sophie Gachet
(1)
,
Robin Goffaux
(11)
,
Karina Gibert
(12)
,
Manuel Herrera
,
Dino Ienco
(13)
,
Romain Julliard
(14)
,
Julien Lecubin
(7)
,
Yannick Legre
(8)
,
Michelle Leydet
(1)
,
Grégoire Lois
(14)
,
Víctor Méndez Muñoz
(15)
,
Jean-Charles Meunier
(16)
,
Isabelle Mougenot
(17)
,
Sophie Pamerlon
(18)
,
Jean-Claude Raynal
(19)
,
Genevieve Romier
,
Dad Roux-Michollet
(3)
,
Alison Specht
(10)
,
Christian Surace
(16)
,
Thierry Tatoni
(1)
1
IMBE -
Institut méditerranéen de biodiversité et d'écologie marine et continentale
2 PatriNat - Patrimoine naturel
3 EVS - Environnement, Ville, Société
4 LaBRI - Laboratoire Bordelais de Recherche en Informatique
5 HCMR - Hellenic Centre for Marine Research
6 ARCHIMEDE - Étude des Civilisations de l'Antiquité : de la Préhistoire à Byzance
7 OSU PYTHEAS - Institut Pythéas
8 LPC - Laboratoire de Physique Corpusculaire - Clermont-Ferrand
9 CNRS - Centre National de la Recherche Scientifique
10 FRB - Fondation pour la recherche sur la Biodiversité
11 Fondation pour la Recherche sur la Biodiversité
12 UPC - Universitat Politècnica de Catalunya = Université polytechnique de Catalogne [Barcelona]
13 TATOO - Fouille de données environnementales
14 CESCO - Centre d'Ecologie et des Sciences de la COnservation
15 CAOS - Department of Computer Architecture & Operating Systems
16 LAM - Laboratoire d'Astrophysique de Marseille
17 UMR 228 Espace-Dev, Espace pour le développement
18 IRD - Institut de Recherche pour le Développement
19 LPT - Laboratoire de Physique Théorique d'Orsay [Orsay]
2 PatriNat - Patrimoine naturel
3 EVS - Environnement, Ville, Société
4 LaBRI - Laboratoire Bordelais de Recherche en Informatique
5 HCMR - Hellenic Centre for Marine Research
6 ARCHIMEDE - Étude des Civilisations de l'Antiquité : de la Préhistoire à Byzance
7 OSU PYTHEAS - Institut Pythéas
8 LPC - Laboratoire de Physique Corpusculaire - Clermont-Ferrand
9 CNRS - Centre National de la Recherche Scientifique
10 FRB - Fondation pour la recherche sur la Biodiversité
11 Fondation pour la Recherche sur la Biodiversité
12 UPC - Universitat Politècnica de Catalunya = Université polytechnique de Catalogne [Barcelona]
13 TATOO - Fouille de données environnementales
14 CESCO - Centre d'Ecologie et des Sciences de la COnservation
15 CAOS - Department of Computer Architecture & Operating Systems
16 LAM - Laboratoire d'Astrophysique de Marseille
17 UMR 228 Espace-Dev, Espace pour le développement
18 IRD - Institut de Recherche pour le Développement
19 LPT - Laboratoire de Physique Théorique d'Orsay [Orsay]
Romain David
- Fonction : Auteur
- PersonId : 11404
- IdHAL : romain-david
- ORCID : 0000-0003-4073-7456
- IdRef : 233679359
Jean-Pierre Féral
- Fonction : Auteur
- PersonId : 10344
- IdHAL : jean-pierre-feral
- ORCID : 0000-0001-7627-0160
- IdRef : 070528799
Fanny Arnaud
- Fonction : Auteur
- PersonId : 7085
- IdHAL : fanny-arnaud
- ORCID : 0000-0002-8784-1384
- IdRef : 178365378
David Auber
- Fonction : Auteur
- PersonId : 13587
- IdHAL : david-auber
- ORCID : 0000-0002-1114-8612
- IdRef : 069771332
Loup Bernard
- Fonction : Auteur
- PersonId : 1224996
- ORCID : 0000-0003-3320-8046
- IdRef : 076131904
Vincent Breton
- Fonction : Auteur
- PersonId : 917630
Aurélie Delavaud
- Fonction : Auteur
- PersonId : 997170
Alrick Dias
- Fonction : Auteur
- PersonId : 1336772
- IdHAL : alrick-dias
- ORCID : 0000-0002-2088-278X
Sophie Gachet
- Fonction : Auteur
- PersonId : 12349
- IdHAL : sophie-gachet
- ORCID : 0000-0002-3599-5189
- IdRef : 070970858
Manuel Herrera
- Fonction : Auteur
Dino Ienco
- Fonction : Auteur
- PersonId : 6226
- IdHAL : dino-ienco
- ORCID : 0000-0002-8736-3132
- IdRef : 172688183
Romain Julliard
- Fonction : Auteur
- PersonId : 1238108
- ORCID : 0000-0001-8897-2514
- IdRef : 135542812
Yannick Legre
- Fonction : Auteur
- PersonId : 917638
Michelle Leydet
- Fonction : Auteur
- PersonId : 20728
- IdHAL : michelle-leydet
- ORCID : 0000-0003-1123-3427
- IdRef : 253120101
Jean-Charles Meunier
- Fonction : Auteur
- PersonId : 1362957
- IdRef : 27631655X
Isabelle Mougenot
- Fonction : Auteur
- PersonId : 14914
- IdHAL : isabelle-mougenot
- ORCID : 0000-0002-1287-3269
- IdRef : 16790714X
Genevieve Romier
- Fonction : Auteur
- PersonId : 174586
- IdHAL : genevieve-romier
Alison Specht
- Fonction : Auteur
- PersonId : 784314
- ORCID : 0000-0002-2623-0854
Christian Surace
- Fonction : Auteur
- PersonId : 11510
- IdHAL : christian-surace
- ORCID : 0000-0003-2592-0113
Thierry Tatoni
- Fonction : Auteur
- PersonId : 173998
- IdHAL : thierry-tatoni
- ORCID : 0000-0002-2557-4444
- IdRef : 069886679
Résumé
Data produced by biodiversity research projects that evaluate and monitor Good Environmental Status have a high potential for use by stakeholders involved in [marine] environmental management. The lack of specific scientific objectives, poor organizational logic, and a characteristically disorganized collection of information leads to a decentralized data distribution, hampering environmental research. In such a heterogeneous system across different organizations and data formats, it is difficult to efficiently harmonize the outputs. There are few tools available to assist. The task of the newly created consortium of IndexMeed is to index biodiversity data (and to provide an index of qualified existing open datasets) and make it possible to build graphs to assist in the analysis and development of new ways to mine data. Standards (including TDWG recommendations) and specific protocols can be applied to interconnect databases. Such semantic approaches greatly increase data interoperability. The aim of this poster is to present the 2016 IndexMed workshop results (https://indexmed2016.sciencesconf.org) and recent actions of the consortium (renamed IndexMeed - Indexing for Mining Ecological and Environmental Data): new approaches to investigate complex research questions and support the emergence of new scientific hypotheses. With one day of plenary sessions and two days of practical workshops, this event was dedicated to the sharing of experience and expertise, the acquisition of practical methods to construct graphs and value data through metadata and ”data papers”. Recent developments in data mining based on graphs, the potential for important contributions to environmental research, particularly about strategic decision-making, and new ways of organizing data were also discussed at the workshop. In particular, this workshop promoted decisions on how (i) to analyze heterogeneous distributed data spread in different databases, (ii) to create matches and incorporate some approximations, (iii) to identify statistical relationships between observed data and the emergence of contextual patterns, and (iv) to encourage openness and the sharing of data, in order to value data and their utilization. The IndexMeed project participants are now exploring the ability of two scientific communities (ecology sensu lato and computer sciences) to work together. The uses of data from biodiversity research demonstrate the prototype functionalities and introduce new perspectives to analyze environmental and societal responses including decision-making. Output of the seminar lists scientific questions that can be resolved by the new data mining approaches and proposes new ways to investigate heterogeneous environmental data with graph mining.
Domaines
Technologies Émergeantes [cs.ET] Bio-informatique [q-bio.QM] Base de données [cs.DB] Biodiversité et Ecologie Environnement et Société EcosystèmesFormat du dépôt | Fichier |
---|---|
Type de dépôt | Poster de conférence |
Titre |
en
Results of IndexMed GRAIL Days 2016: How to use standards to build GRAphs and mIne data for environmentaL research? IndexMeed consortium for data mining in ecology
|
Résumé |
en
Data produced by biodiversity research projects that evaluate and monitor Good Environmental Status have a high potential for use by stakeholders involved in [marine] environmental management. The lack of specific scientific objectives, poor organizational logic, and a characteristically disorganized collection of information leads to a decentralized data distribution, hampering environmental research. In such a heterogeneous system across different organizations and data formats, it is difficult to efficiently harmonize the outputs. There are few tools available to assist. The task of the newly created consortium of IndexMeed is to index biodiversity data (and to provide an index of qualified existing open datasets) and make it possible to build graphs to assist in the analysis and development of new ways to mine data. Standards (including TDWG recommendations) and specific protocols can be applied to interconnect databases. Such semantic approaches greatly increase data interoperability. The aim of this poster is to present the 2016 IndexMed workshop results (https://indexmed2016.sciencesconf.org) and recent actions of the consortium (renamed IndexMeed - Indexing for Mining Ecological and Environmental Data): new approaches to investigate complex research questions and support the emergence of new scientific hypotheses. With one day of plenary sessions and two days of practical workshops, this event was dedicated to the sharing of experience and expertise, the acquisition of practical methods to construct graphs and value data through metadata and ”data papers”. Recent developments in data mining based on graphs, the potential for important contributions to environmental research, particularly about strategic decision-making, and new ways of organizing data were also discussed at the workshop. In particular, this workshop promoted decisions on how (i) to analyze heterogeneous distributed data spread in different databases, (ii) to create matches and incorporate some approximations, (iii) to identify statistical relationships between observed data and the emergence of contextual patterns, and (iv) to encourage openness and the sharing of data, in order to value data and their utilization. The IndexMeed project participants are now exploring the ability of two scientific communities (ecology sensu lato and computer sciences) to work together. The uses of data from biodiversity research demonstrate the prototype functionalities and introduce new perspectives to analyze environmental and societal responses including decision-making. Output of the seminar lists scientific questions that can be resolved by the new data mining approaches and proposes new ways to investigate heterogeneous environmental data with graph mining.
|
Auteur(s) |
Romain David
1
, Jean-Pierre Féral
1
, Anne-Sophie Archambeau
2
, Fanny Arnaud
3
, David Auber
4
, Nicolas Bailly
5
, Loup Bernard
6
, Cyrille Blanpain
7
, Vincent Breton
8
, Denis Couvet
9
, Anna Cohen-Nabeiro
10
, Aurélie Delavaud
10
, Alrick Dias
, Sophie Gachet
1
, Robin Goffaux
11
, Karina Gibert
12
, Manuel Herrera
, Dino Ienco
13
, Romain Julliard
14
, Julien Lecubin
7
, Yannick Legre
8
, Michelle Leydet
1
, Grégoire Lois
14
, Víctor Méndez Muñoz
15
, Jean-Charles Meunier
16
, Isabelle Mougenot
17
, Sophie Pamerlon
18
, Jean-Claude Raynal
19
, Genevieve Romier
, Dad Roux-Michollet
3
, Alison Specht
10
, Christian Surace
16
, Thierry Tatoni
1
1
IMBE -
Institut méditerranéen de biodiversité et d'écologie marine et continentale
( 188653 )
- Aix Marseille Université, Campus Etoile, Faculté St-Jérôme case 421 Av. . escadrille Normandie-Niemen 13397 MARSEILLE CEDEX 20
- France
2
PatriNat -
Patrimoine naturel
( 1006417 )
- Muséum national d'Histoire naturelle - 36 rue Geoffroy-Saint-Hilaire - 75005 Paris - CP 41
- France
3
EVS -
Environnement, Ville, Société
( 145345 )
- 18 Rue Chevreul
69362 LYON CEDEX 07
UMR 5600
- France
4
LaBRI -
Laboratoire Bordelais de Recherche en Informatique
( 3102 )
- Domaine Universitaire 351, cours de la Libération 33405 Talence Cedex
- France
5
HCMR -
Hellenic Centre for Marine Research
( 18532 )
- P.C. 19013 Anavyssos
Attiki
- Grèce
6
ARCHIMEDE -
Étude des Civilisations de l'Antiquité : de la Préhistoire à Byzance
( 185 )
- MISHA 5, allée du général Rouvillois CS 50008 67083 - Strasbourg Cedex
- France
7
OSU PYTHEAS -
Institut Pythéas
( 351757 )
- Technopôle de Château-Gombert
38, rue Frédéric Joliot-Curie
13388 MARSEILLE cedex 13
- France
8
LPC -
Laboratoire de Physique Corpusculaire - Clermont-Ferrand
( 131 )
- Campus des Cézeaux, 24 avenue des Landais, BP 80026, 63171 Aubière Cedex
- France
9
CNRS -
Centre National de la Recherche Scientifique
( 441569 )
- France
10
FRB -
Fondation pour la recherche sur la Biodiversité
( 430953 )
- 195, rue Saint-Jacques
75005 Paris
- France
11
Fondation pour la Recherche sur la Biodiversité
( 361418 )
-
- France
12
UPC -
Universitat Politècnica de Catalunya = Université polytechnique de Catalogne [Barcelona]
( 85878 )
- C./Jordi Girona, 1-3, 08034 Barcelona
- Espagne
13
TATOO -
Fouille de données environnementales
( 388310 )
- France
14
CESCO -
Centre d'Ecologie et des Sciences de la COnservation
( 237629 )
- 55 rue Buffon - 75005 PARIS
- France
15
CAOS -
Department of Computer Architecture & Operating Systems
( 498537 )
- Universitat Aut`onoma de Barcelona (UAB), Bellaterra (Barcelona)
- Espagne
16
LAM -
Laboratoire d'Astrophysique de Marseille
( 179944 )
- Pôle de l'Étoile Site de Château-Gombert 38, rue Frédéric Joliot-Curie 13388 Marseille cedex 13
- France
17
UMR 228 Espace-Dev, Espace pour le développement
( 196623 )
- IRD - Maison de la Télédétection - 500 rue Jean-François Breton - 34093 Montpellier
- France
18
IRD -
Institut de Recherche pour le Développement
( 67872 )
- Siège
Le Sextant
44, bd de Dunkerque
CS 90009
13572 Marseille cedex 02
- France
19
LPT -
Laboratoire de Physique Théorique d'Orsay [Orsay]
( 11 )
- Bâtiment 210 Université Paris XI 91405 Orsay Cedex
- France
|
Titre du congrès |
RDA Ninth Plenary Meeting "Data Infrastructures for Open Science"
|
Date début congrès |
2017-04-05
|
Date fin congrès |
2017-04-07
|
Ville |
Barcelona
|
Pays |
Espagne
|
URL du congrès ou éditeur |
https://www.eubra-bigsea.eu/events/rda-9th-plenary-meeting-barcelona-5-7-april-2017-%E2%80%9Cdata-infrastructures-open-science%E2%80%9D
|
Commentaire |
The 9th RDA Plenary Meeting has taken place from 5th to 7th April 2017 at the Barcelo Sants Hotel, Barcelona, Spain.
Organised under the theme “Data Infrastructures for Open Science”, the event will bring together an international multi-disciplinary audience of data scientists, researchers, industry leaders, entrepreneurs, policymakers and data stewards. Plenary meetings and networking opportunities are all focused on exploring the best ways to exploit the data revolution to improve science and society through data-driven discovery and innovation.
Plenary programme highlights
75+ Working and Interest Group meetings
Plenary Sessions on RDA Recommendations and Adoption
Leading Industry Panel discussions
RDA Recommendation demos and networking opportunities
The plenary meeting is organised by the Barcelona Supercomputing Center-Centro Nacional de Supercomputación (BSC-CNS) with the support of RDA Europe.
|
Langue du document |
Anglais
|
Vulgarisation |
Non
|
Comité de lecture |
Oui
|
Invité |
Non
|
Audience |
Internationale
|
Actes |
Non
|
Date de publication |
2017-04-07
|
Organisateur du congrès |
|
Domaine(s) |
|
DOI | 10.13140/RG.2.2.32504.44806 |
Origine :
Fichiers produits par l'(les) auteur(s)
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