Expanding Tara Oceans Protocols for Underway, Ecosystemic Sampling of the Ocean-Atmosphere Interface During Tara Pacific Expedition (2016–2018)
Gabriel Gorsky
(1)
,
Guillaume Bourdin
(2)
,
Fabien Lombard
(1)
,
Maria Luiza Pedrotti
(1)
,
Samuel Audrain
(3)
,
Nicolas Bin
(3)
,
Emmanuel Boss
(2)
,
Chris Bowler
(4)
,
Nicolas Cassar
(5, 6)
,
Loic Caudan
(3)
,
Geneviève Chabot
(7)
,
Natalie Cohen
(8)
,
Daniel Cron
(3)
,
Colomban de Vargas
(9)
,
John Dolan
(1)
,
Eric Douville
(10, 11)
,
Amanda Elineau
(1)
,
J. Michel Flores
(12, 13)
,
Jean-François Ghiglione
(14)
,
Nils Haëntjens
(2)
,
Martin Hertau
(3)
,
Seth G. John
(15)
,
Rachel L. Kelly
(15)
,
Ilan Koren
(12, 13)
,
Yajuan Lin
(5, 6)
,
Dominique Marie
(16)
,
Clémentine Moulin
(3)
,
Yohann Moucherie
(3)
,
Stéphane Pesant
(17, 18)
,
Marc Picheral
(1)
,
Julie Poulain
(19)
,
Mireille Pujo-Pay
(17)
,
Gilles Reverdin
(20)
,
Sarah Romac
(9)
,
Matthew B. Sullivan
(21)
,
Miri Trainic
(12, 13)
,
Marc Tressol
(22, 7)
,
Romain Troublé
(3)
,
Assaf Vardi
(13)
,
Christian R. Voolstra
(23)
,
Patrick Wincker
(24, 19)
,
Sylvain Agostini
(25)
,
Bernard Banaigs
(26, 27)
,
Emilie Boissin
(27, 26)
,
Didier Forcioli
(28, 29, 30)
,
Paola Furla
(28, 29, 30)
,
Pierre Galand
(31)
,
Eric Gilson
(29, 30)
,
Stéphanie Reynaud
(32)
,
Shinichi Sunagawa
(33)
,
Olivier P. Thomas
(34)
,
Rebecca Lisette Vega Thurber
(35)
,
Didier Zoccola
(32)
,
Serge Planes
(27, 26)
,
Denis Allemand
(32)
,
Eric Karsenti
(36)
1
LOV -
Laboratoire d'océanographie de Villefranche
2 University of Maine
3 Tara Expéditions
4 IBENS - Institut de biologie de l'Ecole Normale Supérieure
5 LEMAR - Laboratoire des Sciences de l'Environnement Marin (LEMAR)
6 Nicholas School of the Environment
7 Mercator Océan
8 WHOI - Woods Hole Oceanographic Institution
9 EPEP - Evolution des Protistes et Ecosystèmes Pélagiques
10 LSCE - Laboratoire des Sciences du Climat et de l'Environnement [Gif-sur-Yvette]
11 GEOTRAC - Géochrononologie Traceurs Archéométrie
12 Department of Earth and Planetary Sciences [Rehovot]
13 Weizmann Institute of Science [Rehovot, Israël]
14 LOMIC - Laboratoire d'Océanographie Microbienne
15 USC - University of Southern California
16 SBR - Station biologique de Roscoff = Roscoff Marine Station
17 MARUM - Center for Marine Environmental Sciences [Bremen]
18 PANGAEA - Data Publisher for Earth and Environmental Science
19 GENOSCOPE - Genoscope - Centre national de séquençage [Evry]
20 LOCEAN-PROTEO - Processus et interactions de fine échelle océanique
21 Department of Civil, Environmental and Geodetic Engineering [Columbus]
22 LAERO - Laboratoire d'aérologie
23 Universität Konstanz
24 CEA - Commissariat à l'énergie atomique et aux énergies alternatives
25 Shimoda Marine Research Center
26 LabEX CORAIL - Laboratoire d'Excellence CORAIL
27 CRIOBE - Centre de recherches insulaires et observatoire de l'environnement
28 SM - Symbiose Marine
29 IRCAN - Institut de Recherche sur le Cancer et le Vieillissement
30 Dpt génétique médicale [CHU Nice]
31 LECOB - Laboratoire d'Ecogéochimie des environnements benthiques
32 CSM - Centre Scientifique de Monaco
33 D-BIOL - Department of Biology [ETH Zürich]
34 NUI Galway - National University of Ireland [Galway]
35 OSU - Oregon State University
36 EMBL - European Molecular Biology Laboratory [Heidelberg]
2 University of Maine
3 Tara Expéditions
4 IBENS - Institut de biologie de l'Ecole Normale Supérieure
5 LEMAR - Laboratoire des Sciences de l'Environnement Marin (LEMAR)
6 Nicholas School of the Environment
7 Mercator Océan
8 WHOI - Woods Hole Oceanographic Institution
9 EPEP - Evolution des Protistes et Ecosystèmes Pélagiques
10 LSCE - Laboratoire des Sciences du Climat et de l'Environnement [Gif-sur-Yvette]
11 GEOTRAC - Géochrononologie Traceurs Archéométrie
12 Department of Earth and Planetary Sciences [Rehovot]
13 Weizmann Institute of Science [Rehovot, Israël]
14 LOMIC - Laboratoire d'Océanographie Microbienne
15 USC - University of Southern California
16 SBR - Station biologique de Roscoff = Roscoff Marine Station
17 MARUM - Center for Marine Environmental Sciences [Bremen]
18 PANGAEA - Data Publisher for Earth and Environmental Science
19 GENOSCOPE - Genoscope - Centre national de séquençage [Evry]
20 LOCEAN-PROTEO - Processus et interactions de fine échelle océanique
21 Department of Civil, Environmental and Geodetic Engineering [Columbus]
22 LAERO - Laboratoire d'aérologie
23 Universität Konstanz
24 CEA - Commissariat à l'énergie atomique et aux énergies alternatives
25 Shimoda Marine Research Center
26 LabEX CORAIL - Laboratoire d'Excellence CORAIL
27 CRIOBE - Centre de recherches insulaires et observatoire de l'environnement
28 SM - Symbiose Marine
29 IRCAN - Institut de Recherche sur le Cancer et le Vieillissement
30 Dpt génétique médicale [CHU Nice]
31 LECOB - Laboratoire d'Ecogéochimie des environnements benthiques
32 CSM - Centre Scientifique de Monaco
33 D-BIOL - Department of Biology [ETH Zürich]
34 NUI Galway - National University of Ireland [Galway]
35 OSU - Oregon State University
36 EMBL - European Molecular Biology Laboratory [Heidelberg]
Gabriel Gorsky
- Fonction : Auteur
- PersonId : 775404
- ORCID : 0000-0002-1099-8711
Fabien Lombard
- Fonction : Auteur
- PersonId : 8141
- IdHAL : fabien-lombard
- ORCID : 0000-0002-8626-8782
- IdRef : 108028747
Maria Luiza Pedrotti
- Fonction : Auteur
- PersonId : 741979
- IdHAL : maria-luiza-pedrotti
- ORCID : 0000-0002-9963-0402
- IdRef : 154480894
Emmanuel Boss
- Fonction : Auteur
- PersonId : 774380
- ORCID : 0000-0002-8334-9595
- IdRef : 195135229
Chris Bowler
- Fonction : Auteur
- PersonId : 1228231
- IdHAL : chris-bowler
- ORCID : 0000-0003-3835-6187
- IdRef : 06874904X
Nicolas Cassar
- Fonction : Auteur
- PersonId : 780679
- ORCID : 0000-0003-0100-3783
Colomban de Vargas
- Fonction : Auteur
- PersonId : 1196134
- IdHAL : colomban-de-vargas
- ORCID : 0000-0002-6476-6019
- IdRef : 144372401
John Dolan
- Fonction : Auteur
- PersonId : 177200
- IdHAL : john-dolan
- ORCID : 0000-0002-9454-1355
- IdRef : 154480509
Eric Douville
- Fonction : Auteur
- PersonId : 181282
- IdHAL : eric-douville
- ORCID : 0000-0002-6673-1768
- IdRef : 171629655
Dominique Marie
- Fonction : Auteur
- PersonId : 965551
- IdRef : 279090749
Marc Picheral
- Fonction : Auteur
- PersonId : 758224
- ORCID : 0000-0001-8172-5473
Julie Poulain
- Fonction : Auteur
- PersonId : 756903
- IdHAL : julie-poulain
- ORCID : 0000-0002-8744-3116
- IdRef : 061407232
Mireille Pujo-Pay
- Fonction : Auteur
- PersonId : 835821
- IdHAL : mireille-pujo-pay
- ORCID : 0000-0002-9418-7499
Gilles Reverdin
- Fonction : Auteur
- PersonId : 6139
- IdHAL : gilles-reverdin
Patrick Wincker
- Fonction : Auteur
- PersonId : 757160
- IdHAL : patrick-wincker
- ORCID : 0000-0001-7562-3454
Emilie Boissin
- Fonction : Auteur
- PersonId : 773657
- ORCID : 0000-0002-4110-790X
- IdRef : 131975765
Paola Furla
- Fonction : Auteur
- PersonId : 855108
Pierre Galand
- Fonction : Auteur
- PersonId : 736022
- IdHAL : pierre-galand
- ORCID : 0000-0002-2238-3247
- IdRef : 175353360
Eric Gilson
- Fonction : Auteur
- PersonId : 756418
- ORCID : 0000-0001-5738-6723
- IdRef : 133819302
Didier Zoccola
- Fonction : Auteur
- PersonId : 855074
- ORCID : 0000-0002-1524-8098
- IdRef : 153239379
Serge Planes
- Fonction : Auteur
- PersonId : 740913
- IdHAL : serge-planes
- ORCID : 0000-0002-5689-5371
- IdRef : 070226385
Denis Allemand
- Fonction : Auteur
- PersonId : 1187812
- ORCID : 0000-0002-3089-4290
Résumé
Interactions between the ocean and the atmosphere occur at the air-sea interface through the transfer of momentum, heat, gases and particulate matter, and through the impact of the upper-ocean biology on the composition and radiative properties of this boundary layer. The Tara Pacific expedition, launched in May 2016 aboard the schooner Tara, was a 29-month exploration with the dual goals to study the ecology of reef ecosystems along ecological gradients in the Pacific Ocean and to assess inter-island and open ocean surface plankton and neuston community structures. In addition, key atmospheric properties were measured to study links between the two boundary layer properties. A major challenge for the open ocean sampling was the lack of ship-time available for work at "stations". The time constraint led us to develop new underway sampling approaches to optimize physical, chemical, optical, and genomic methods to capture the entire community structure of the surface layers, from viruses to metazoans in their oceanographic and atmospheric physicochemical context. An international scientific consortium was put together to analyze the samples, generate data, and develop datasets in coherence with the existing Tara Oceans database. Beyond adapting the extensive Tara Oceans sampling protocols for high-resolution underway sampling, the key novelties compared to Tara Oceans' global assessment of plankton include the measurement of (i) surface plankton and neuston biogeography and functional diversity; (ii) bioactive trace metals distribution at the ocean surface and metal-dependent ecosystem structures; (iii) marine aerosols, including biological entities; (iv) geography, nature and colonization of microplastic; and (v) high-resolution underway assessment of net community production via equilibrator inlet mass spectrometry. We are committed to share the data collected during this expedition, making it an important resource important resource to address a variety of scientific questions.
| Format du dépôt | Fichier |
|---|---|
| Type de dépôt | Article dans une revue |
| Résumé |
en
Interactions between the ocean and the atmosphere occur at the air-sea interface through the transfer of momentum, heat, gases and particulate matter, and through the impact of the upper-ocean biology on the composition and radiative properties of this boundary layer. The Tara Pacific expedition, launched in May 2016 aboard the schooner Tara, was a 29-month exploration with the dual goals to study the ecology of reef ecosystems along ecological gradients in the Pacific Ocean and to assess inter-island and open ocean surface plankton and neuston community structures. In addition, key atmospheric properties were measured to study links between the two boundary layer properties. A major challenge for the open ocean sampling was the lack of ship-time available for work at "stations". The time constraint led us to develop new underway sampling approaches to optimize physical, chemical, optical, and genomic methods to capture the entire community structure of the surface layers, from viruses to metazoans in their oceanographic and atmospheric physicochemical context. An international scientific consortium was put together to analyze the samples, generate data, and develop datasets in coherence with the existing Tara Oceans database. Beyond adapting the extensive Tara Oceans sampling protocols for high-resolution underway sampling, the key novelties compared to Tara Oceans' global assessment of plankton include the measurement of (i) surface plankton and neuston biogeography and functional diversity; (ii) bioactive trace metals distribution at the ocean surface and metal-dependent ecosystem structures; (iii) marine aerosols, including biological entities; (iv) geography, nature and colonization of microplastic; and (v) high-resolution underway assessment of net community production via equilibrator inlet mass spectrometry. We are committed to share the data collected during this expedition, making it an important resource important resource to address a variety of scientific questions.
|
| Titre |
en
Expanding Tara Oceans Protocols for Underway, Ecosystemic Sampling of the Ocean-Atmosphere Interface During Tara Pacific Expedition (2016–2018)
|
| Auteur(s) |
Gabriel Gorsky
1
, Guillaume Bourdin
2
, Fabien Lombard
1
, Maria Luiza Pedrotti
1
, Samuel Audrain
3
, Nicolas Bin
3
, Emmanuel Boss
2
, Chris Bowler
4
, Nicolas Cassar
5, 6
, Loic Caudan
3
, Geneviève Chabot
7
, Natalie Cohen
8
, Daniel Cron
3
, Colomban de Vargas
9
, John Dolan
1
, Eric Douville
10, 11
, Amanda Elineau
1
, J. Michel Flores
12, 13
, Jean-François Ghiglione
14
, Nils Haëntjens
2
, Martin Hertau
3
, Seth G. John
15
, Rachel L. Kelly
15
, Ilan Koren
12, 13
, Yajuan Lin
5, 6
, Dominique Marie
16
, Clémentine Moulin
3
, Yohann Moucherie
3
, Stéphane Pesant
17, 18
, Marc Picheral
1
, Julie Poulain
19
, Mireille Pujo-Pay
17
, Gilles Reverdin
20
, Sarah Romac
9
, Matthew B. Sullivan
21
, Miri Trainic
12, 13
, Marc Tressol
22, 7
, Romain Troublé
3
, Assaf Vardi
13
, Christian R. Voolstra
23
, Patrick Wincker
24, 19
, Sylvain Agostini
25
, Bernard Banaigs
26, 27
, Emilie Boissin
27, 26
, Didier Forcioli
28, 29, 30
, Paola Furla
28, 29, 30
, Pierre Galand
31
, Eric Gilson
29, 30
, Stéphanie Reynaud
32
, Shinichi Sunagawa
33
, Olivier P. Thomas
34
, Rebecca Lisette Vega Thurber
35
, Didier Zoccola
32
, Serge Planes
27, 26
, Denis Allemand
32
, Eric Karsenti
36
1
LOV -
Laboratoire d'océanographie de Villefranche
( 541740 )
- 181, chemin du lazaret BP 28 06230 VILLEFRANCHE SUR MER Cedex
- France
2
University of Maine
( 450972 )
- University of Maine, Orono, Maine 04469
- États-Unis
3
Tara Expéditions
( 445405 )
- Fondation Tara Océan - base Paris
8 rue de Prague
75012 Paris
- France
4
IBENS -
Institut de biologie de l'Ecole Normale Supérieure
( 1757 )
- 46 Rue d'Ulm 75230 PARIS CEDEX 05
- France
5
LEMAR -
Laboratoire des Sciences de l'Environnement Marin (LEMAR)
( 81089 )
- IUEM Technopôle Brest-Iroise - rue Dumont d'Urville - 29280 Plouzané - FRANCE
- France
6
Nicholas School of the Environment
( 434296 )
- Duke University, Durham NC 27708
- États-Unis
7
Mercator Océan
( 186361 )
- Parc Technologique du Canal 8-10 rue Hermès - Bâtiment C 31520 Ramonville St Agne
- France
8
WHOI -
Woods Hole Oceanographic Institution
( 118959 )
- 266 Woods Hole Road Woods Hole, MA 02543-1050
- États-Unis
9
EPEP -
Evolution des Protistes et Ecosystèmes Pélagiques
( 408388 )
- France
10
LSCE -
Laboratoire des Sciences du Climat et de l'Environnement [Gif-sur-Yvette]
( 518 )
- Bât. 12,
avenue de la Terrasse,
F-91198 GIF-SUR-YVETTE CEDEX
- France
11
GEOTRAC -
Géochrononologie Traceurs Archéométrie
( 578523 )
- LSCE. CEA Paris-Saclay. Orme des merisiers. 91190 Saint-Aubin.
- France
12
Department of Earth and Planetary Sciences [Rehovot]
( 509329 )
- Weizmann Institute of Science, Rehovot 76100 ISRAEL
- Israël
13
Weizmann Institute of Science [Rehovot, Israël]
( 366895 )
- 234 Herzl Street, Rehovot 7610001
- Israël
14
LOMIC -
Laboratoire d'Océanographie Microbienne
( 541950 )
- Observatoire Océanologique, Banyuls/mer
- France
15
USC -
University of Southern California
( 301992 )
- Los Angeles, CA, 90089-0484, USA
- États-Unis
16
SBR -
Station biologique de Roscoff = Roscoff Marine Station
( 541806 )
- Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX
- France
17
MARUM -
Center for Marine Environmental Sciences [Bremen]
( 166481 )
- Leobener Str. 8, D-28359 Bremen
- Allemagne
18
PANGAEA -
Data Publisher for Earth and Environmental Science
( 450975 )
- Allemagne
19
GENOSCOPE -
Genoscope - Centre national de séquençage [Evry]
( 55375 )
- 2, rue Gaston Crémieux CP5706 91057 EVRY Cedex
- France
20
LOCEAN-PROTEO -
Processus et interactions de fine échelle océanique
( 541830 )
- France
21
Department of Civil, Environmental and Geodetic Engineering [Columbus]
( 468015 )
- College of Engineering, 470 Hitchcock Hall, 2070 Neil Avenue, Columbus, OH 43210
- États-Unis
22
LAERO -
Laboratoire d'aérologie
( 728 )
- 14 avenue Edouard Belin 31400 Toulouse
- France
23
Universität Konstanz
( 362661 )
- Allemagne
24
CEA -
Commissariat à l'énergie atomique et aux énergies alternatives
( 300016 )
- Centre de Saclay
Centre de Grenoble
Centre de Cadarache
etc
- France
25
Shimoda Marine Research Center
( 36616 )
- Shimoda Marine Research Center University of Tsukuba
10-10-1 Gochome, Shimoda, Shizuoka 415-0025, Japon
- Japon
26
LabEX CORAIL -
Laboratoire d'Excellence CORAIL
( 209113 )
- 58 avenue Paul Alduy 66860 Perpignan CEDEX - Tél. : 04 30 19 23 32 - contact@labex-corail.fr
- France
27
CRIOBE -
Centre de recherches insulaires et observatoire de l'environnement
( 107006 )
- BP 1013 Papetoiai 98729 PAPETOAI
- France
28
SM -
Symbiose Marine
( 495436 )
- Paris
- France
29
IRCAN -
Institut de Recherche sur le Cancer et le Vieillissement
( 182186 )
- Faculté de médecine, 28 avenue de Valombrose 06107 Nice Cedex 2
- France
30
Dpt génétique médicale [CHU Nice]
( 459557 )
- France
31
LECOB -
Laboratoire d'Ecogéochimie des environnements benthiques
( 542001 )
- France
32
CSM -
Centre Scientifique de Monaco
( 227805 )
- Avenue Saint-Martin, MC 98000, Monaco
- Monaco
33
D-BIOL -
Department of Biology [ETH Zürich]
( 545375 )
- Wolfgang-Pauli-Str. 27, 8093 Zürich
- Suisse
34
NUI Galway -
National University of Ireland [Galway]
( 373032 )
- Irlande
35
OSU -
Oregon State University
( 489548 )
- 1500 SW Jefferson St., Corvallis, OR 97331
- États-Unis
36
EMBL -
European Molecular Biology Laboratory [Heidelberg]
( 30303 )
- Meyerhofstraße 1, 69117 Heidelberg, Germany
- Allemagne
|
| Audience |
Internationale
|
| Page/Identifiant |
650
|
| Date de publication |
2019-12-11
|
| Comité de lecture |
Oui
|
| Vulgarisation |
Non
|
| Langue du document |
Anglais
|
| Nom de la revue |
|
| Volume |
6
|
| Public visé |
Scientifique
|
| Domaine(s) |
|
| Voir aussi |
|
| Collaboration/Projet |
|
| Projet(s) ANR |
|
| Mots-clés |
en
microplastic, IOP, neuston, plankton genomics, taxonomy, imaging, aerosols, trace metals, NCP, ACL
|
| DOI | 10.3389/fmars.2019.00750 |
| UT key WOS | 000502972000001 |
Origine :
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